If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 45 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ), 'gf_id' => 'HOM05D000771', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000771' ), 'data_identifier' => 'HOM05D000771', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000771', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '762', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38320' => 'bna', 'A08p31650' => 'bna', 'A09p55660' => 'bna', 'A09p61490' => 'bna', 'A10p31320' => 'bna', 'Aa31LG11G5840' => 'aar', 'Aa31LG3G5260' => 'aar', 'Aa31LG4G410' => 'aar', 'Aa31LG7G120' => 'aar', 'Aa31LG8G2990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1813' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2685' => 'aag', 'Actinidia01750' => 'ach', 'Actinidia03023' => 'ach', 'Actinidia03868' => 'ach', 'Actinidia03976' => 'ach', 'Actinidia06186' => 'ach', 'Actinidia06187' => 'ach', 'Actinidia07946' => 'ach', 'Actinidia08799' => 'ach', 'Actinidia13234' => 'ach', 'Actinidia14060' => 'ach', 'Actinidia15985' => 'ach', 'Actinidia15988' => 'ach', 'Actinidia21973' => 'ach', 'Actinidia26385' => 'ach', 'Actinidia27817' => 'ach', 'Actinidia34737' => 'ach', 'Actinidia38243' => 'ach', 'Actinidia38736' => 'ach', 'Actinidia40484' => 'ach', 'Ah.04g162590' => 'amhyb', 'Ah.08g222060' => 'amhyb', 'Ah.09g225240' => 'amhyb', 'Ah.12g059380' => 'amhyb', 'Ah.14g079700' => 'amhyb', 'Ah.16g104410' => 'amhyb', 'AL1G27430' => 'aly', 'AL3G23330' => 'aly', 'AL3G28450' => 'aly', 'AL4G16870' => 'aly', 'AL6G14530' => 'aly', 'Aqoxy1G00615' => 'aox', 'Aqoxy1G00618' => 'aox', 'Aqoxy4G03173' => 'aox', 'Aqoxy4G03174' => 'aox', 'Aqoxy7G03675' => 'aox', 'Aqoxy7G03679' => 'aox', 'arahy.Tifrunner.gnm1.ann1.552WG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J6GUV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PJP7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BMRM52' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0GHFU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2LXEC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8Q38Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IKB72F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2H1V2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB6VUR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X66ACT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRVF7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XWCF3U' => 'arhy', 'AT1G15340' => 'ath', 'AT2G10560' => 'ath', 'AT2G25460' => 'ath', 'AT3G11760' => 'ath', 'AT3G15790' => 'ath', 'AT5G04860' => 'ath', 'ATR0049G076' => 'atr', 'ATR0594G152' => 'atr', 'ATR0621G003' => 'atr', 'ATR0697G182' => 'atr', 'ATR0697G213' => 'atr', 'Atru.chr1.2978' => 'acertr', 'Atru.chr12.1081' => 'acertr', 'Atru.chr7.1127' => 'acertr', 'Atru.chr7.2427' => 'acertr', 'Atru.chr7.2428' => 'acertr', 'Atru.chr8.1314' => 'acertr', 'AUR62011150' => 'cqu', 'AUR62012398' => 'cqu', 'AUR62013337' => 'cqu', 'AUR62014279' => 'cqu', 'AUR62030705' => 'cqu', 'AUR62031507' => 'cqu', 'AUR62034159' => 'cqu', 'AUR62036345' => 'cqu', 'BcaB03g13067' => 'bca', 'BcaB04g20903' => 'bca', 'BcaB04g21118' => 'bca', 'BcaB08g35180' => 'bca', 'BcaC03g14462' => 'bca', 'BcaC05g25494' => 'bca', 'BcaC06g32193' => 'bca', 'BcaC07g38778' => 'bca', 'BcaC07g40867' => 'bca', 'BcaC07g41511' => 'bca', 'BcaC09g48195' => 'bca', 'BcaC09g48557' => 'bca', 'BolC1t04820H' => 'bol', 'BolC1t05290H' => 'bol', 'BolC5t30084H' => 'bol', 'BolC8t49336H' => 'bol', 'BolC8t51436H' => 'bol', 'BolC9t59943H' => 'bol', 'BraA01t03883Z' => 'bra', 'BraA01t04161Z' => 'bra', 'BraA05t22184Z' => 'bra', 'BraA08t35086Z' => 'bra', 'BraA09t40967Z' => 'bra', 'BraA09t41521Z' => 'bra', 'BraA10t45175Z' => 'bra', 'C01p48660' => 'bna', 'C05p13470' => 'bna', 'C08p17100' => 'bna', 'C08p38650' => 'bna', 'C08p45060' => 'bna', 'C09p71960' => 'bna', 'CAN.G1226.5' => 'can', 'CAN.G1226.6' => 'can', 'CAN.G143.53' => 'can', 'CAN.G1484.6' => 'can', 'CAN.G1484.7' => 'can', 'CAN.G1484.8' => 'can', 'CAN.G1484.9' => 'can', 'CAN.G1503.6' => 'can', 'CAN.G1652.10' => 'can', 'CAN.G1652.8' => 'can', 'CAN.G1833.3' => 'can', 'CAN.G186.65' => 'can', 'CAN.G186.66' => 'can', 'CAN.G1922.1' => 'can', 'CAN.G407.89' => 'can', 'CAN.G525.14' => 'can', 'CAN.G525.15' => 'can', 'CAN.G525.16' => 'can', 'CAN.G551.83' => 'can', 'CAN.G6.5' => 'can', 'CAN.G65.206' => 'can', 'CAN.G676.20' => 'can', 'CAN.G676.40' => 'can', 'CAN.G911.32' => 'can', 'CANSAT11G2574' => 'cansat', 'CANSAT54G2101' => 'cansat', 'CANSAT56G1412' => 'cansat', 'CANSAT56G3509' => 'cansat', 'CANSAT56G3778' => 'cansat', 'CANSAT64G2153' => 'cansat', 'CANSAT78G0042' => 'cansat', 'CANSAT78G0987' => 'cansat', 'CANSAT78G2146' => 'cansat', 'CANSAT78G2378' => 'cansat', 'CANSAT78G2447' => 'cansat', 'CARHR015870' => 'chi', 'CARHR086310' => 'chi', 'CARHR090880' => 'chi', 'CARHR115990' => 'chi', 'CARHR208420' => 'chi', 'Carub.0001s1509' => 'cru', 'Carub.0003s1110' => 'cru', 'Carub.0003s1553' => 'cru', 'Carub.0004s0510' => 'cru', 'Carub.0006s0377' => 'cru', 'Ca_06924_v3' => 'car', 'Ca_09066_v3' => 'car', 'Ca_10425_v3' => 'car', 'Ca_11673_v3' => 'car', 'Ca_15739_v3' => 'car', 'CBR_g48576' => 'cbr', 'Cc01_g07710' => 'ccan', 'Cc02_g09280' => 'ccan', 'Cc04_g04330' => 'ccan', 'Cc06_g06790' => 'ccan', 'Cc06_g08300' => 'ccan', 'Cc08_g00610' => 'ccan', 'CDE02G4567' => 'cde', 'CDE04G2640' => 'cde', 'CDE04G3409' => 'cde', 'CDE06G2460' => 'cde', 'CDE07G0474' => 'cde', 'CDE07G0850' => 'cde', 'Cfa001971' => 'cfa', 'Cfa003393' => 'cfa', 'Cfa010208' => 'cfa', 'Cfa010508' => 'cfa', 'Cfa013144' => 'cfa', 'Cfa020061' => 'cfa', 'Ciclev10007591m.g' => 'ccl', 'Ciclev10010753m.g' => 'ccl', 'Ciclev10011109m.g' => 'ccl', 'Ciclev10017971m.g' => 'ccl', 'Ciclev10025929m.g' => 'ccl', 'CiPaw.01G205500' => 'cil', 'CiPaw.01G247100' => 'cil', 'CiPaw.02G156900' => 'cil', 'CiPaw.03G157000' => 'cil', 'CiPaw.03G245800' => 'cil', 'CiPaw.04G172700' => 'cil', 'CiPaw.07G223400' => 'cil', 'CiPaw.07G223900' => 'cil', 'CiPaw.09G022400' => 'cil', 'CiPaw.10G019500' => 'cil', 'CiPaw.13G045100' => 'cil', 'CiPaw.14G036100' => 'cil', 'ClCG05G022000' => 'cla', 'ClCG06G011310' => 'cla', 'ClCG08G013380' => 'cla', 'ClCG09G002910' => 'cla', 'ClCG10G018160' => 'cla', 'ClCG11G003150' => 'cla', 'COL.COLO4_12958' => 'col', 'COL.COLO4_18860' => 'col', 'COL.COLO4_29524' => 'col', 'COL.COLO4_35098' => 'col', 'Cpa.g.sc104.8' => 'cpa', 'Cpa.g.sc33.127' => 'cpa', 'Cpa.g.sc46.15' => 'cpa', 'Cpa.g.sc954.4' => 'cpa', 'CsaV3_1G030350' => 'csa', 'CsaV3_2G002970' => 'csa', 'CsaV3_2G032120' => 'csa', 'CsaV3_3G038150' => 'csa', 'CsaV3_4G001590' => 'csa', 'CsaV3_5G035160' => 'csa', 'CsaV3_7G032420' => 'csa', 'CsaV3_UNG086680' => 'csa', 'CSS0005443' => 'camsi', 'CSS0006627' => 'camsi', 'CSS0022646' => 'camsi', 'CSS0026891' => 'camsi', 'CSS0032303' => 'camsi', 'CSS0044083' => 'camsi', 'CSS0047233' => 'camsi', 'CSS0047338' => 'camsi', 'CSS0049938' => 'camsi', 'DCAR_001511' => 'dca', 'DCAR_006208' => 'dca', 'DCAR_006474' => 'dca', 'DCAR_009070' => 'dca', 'DCAR_009314' => 'dca', 'DCAR_013446' => 'dca', 'DCAR_014893' => 'dca', 'DCAR_017805' => 'dca', 'DCAR_020686' => 'dca', 'DCAR_020917' => 'dca', 'Dinv03811' => 'din', 'Dinv04429' => 'din', 'Dinv06043' => 'din', 'Dinv08647' => 'din', 'Dinv12357' => 'din', 'Dinv30600' => 'din', 'Dinv31367' => 'din', 'Dinv31780' => 'din', 'Dinv33551' => 'din', 'Dinv36506' => 'din', 'Dinv38118' => 'din', 'Dinv41494' => 'din', 'Duzib093G0059' => 'dzi', 'Duzib106G0046' => 'dzi', 'Duzib150G1691' => 'dzi', 'Duzib160G0079' => 'dzi', 'Duzib168G0260' => 'dzi', 'Duzib168G0551' => 'dzi', 'Duzib187G1926' => 'dzi', 'Duzib192G0222' => 'dzi', 'Duzib235G0668' => 'dzi', 'ECA232G4100' => 'eca', 'ECA234G1899' => 'eca', 'ECA238G1170' => 'eca', 'ECA238G1967' => 'eca', 'ECA238G3738' => 'eca', 'ECA240G1598' => 'eca', 'ECA248G0352' => 'eca', 'ECA248G3300' => 'eca', 'EL10Ac2g04232' => 'bvu', 'EL10Ac4g08737' => 'bvu', 'EL10Ac5g11839' => 'bvu', 'EL10Ac7g16276' => 'bvu', 'EL10Ac8g18685' => 'bvu', 'Eucgr.A02562' => 'egr', 'Eucgr.B03803' => 'egr', 'Eucgr.C01735' => 'egr', 'Eucgr.K01915' => 'egr', 'Eucgr.L01932' => 'egr', 'FAN02G0149' => 'fan', 'FAN02G3385' => 'fan', 'FAN05G2834' => 'fan', 'FAN05G4027' => 'fan', 'FAN05G5476' => 'fan', 'FAN09G0010' => 'fan', 'FAN09G2507' => 'fan', 'FAN13G2533' => 'fan', 'FAN14G0554' => 'fan', 'FAN14G2647' => 'fan', 'FAN14G3861' => 'fan', 'FAN15G3504' => 'fan', 'FAN19G0037' => 'fan', 'FAN19G0593' => 'fan', 'FAN20G1884' => 'fan', 'FAN23G1760' => 'fan', 'FAN24G3037' => 'fan', 'FAN26G1268' => 'fan', 'FAN27G1739' => 'fan', 'FAN28G2420' => 'fan', 'FvH4_1g03020' => 'fve', 'FvH4_2g29030' => 'fve', 'FvH4_6g20670' => 'fve', 'FvH4_6g29820' => 'fve', 'Glyma.02G193700' => 'gma', 'Glyma.03G203600' => 'gma', 'Glyma.04G066600' => 'gma', 'Glyma.04G154300' => 'gma', 'Glyma.04G154500' => 'gma', 'Glyma.06G068000' => 'gma', 'Glyma.06G217500' => 'gma', 'Glyma.06G224300' => 'gma', 'Glyma.06G224700' => 'gma', 'Glyma.10G083500' => 'gma', 'Glyma.10G194900' => 'gma', 'Glyma.13G365500' => 'gma', 'Glyma.14G116400' => 'gma', 'Glyma.15G007700' => 'gma', 'Glyma.15G205233' => 'gma', 'Glyma.16G090300' => 'gma', 'Glyma.17G211300' => 'gma', 'Glyma.19G201000' => 'gma', 'Glyma.20G195050' => 'gma', 'Gohir.A01G200300' => 'ghi', 'Gohir.A05G015300' => 'ghi', 'Gohir.A06G054800' => 'ghi', 'Gohir.A07G028200' => 'ghi', 'Gohir.A09G085200' => 'ghi', 'Gohir.A09G133000' => 'ghi', 'Gohir.A10G073600' => 'ghi', 'Gohir.A11G315400' => 'ghi', 'Gohir.D01G190400' => 'ghi', 'Gohir.D05G016400' => 'ghi', 'Gohir.D06G121600' => 'ghi', 'Gohir.D07G032300' => 'ghi', 'Gohir.D07G040450' => 'ghi', 'Gohir.D09G085200' => 'ghi', 'Gohir.D09G129300' => 'ghi', 'Gohir.D10G077500' => 'ghi', 'Gohir.D11G332400' => 'ghi', 'Gorai.001G033700' => 'gra', 'Gorai.001G042900' => 'gra', 'Gorai.002G234100' => 'gra', 'Gorai.006G101100' => 'gra', 'Gorai.006G148000' => 'gra', 'Gorai.007G363300' => 'gra', 'Gorai.009G016600' => 'gra', 'Gorai.010G062800' => 'gra', 'Gorai.010G141900' => 'gra', 'Gorai.011G083900' => 'gra', 'GSVIVG01015565001' => 'vvi', 'GSVIVG01016350001' => 'vvi', 'GSVIVG01017330001' => 'vvi', 'GSVIVG01022569001' => 'vvi', 'GSVIVG01035860001' => 'vvi', 'GSVIVG01036046001' => 'vvi', 'HanXRQChr06g0180421' => 'han', 'HanXRQChr07g0194451' => 'han', 'HanXRQChr07g0196631' => 'han', 'HanXRQChr09g0241661' => 'han', 'HanXRQChr11g0321561' => 'han', 'HanXRQChr11g0347541' => 'han', 'HanXRQChr11g0353561' => 'han', 'HanXRQChr12g0356741' => 'han', 'HanXRQChr12g0356761' => 'han', 'HanXRQChr14g0453301' => 'han', 'HanXRQChr14g0453311' => 'han', 'HanXRQChr14g0453321' => 'han', 'HanXRQChr14g0455531' => 'han', 'HanXRQChr14g0460921' => 'han', 'Haze_03434' => 'cav', 'Haze_16550' => 'cav', 'Haze_20137' => 'cav', 'Haze_21517' => 'cav', 'Haze_23591' => 'cav', 'Haze_25556' => 'cav', 'Hma1.2p1_0007F.1_g005320' => 'hma', 'Hma1.2p1_0018F.1_g012250' => 'hma', 'Hma1.2p1_0098F.1_g048210' => 'hma', 'Hma1.2p1_0101F.1_g049630' => 'hma', 'Hma1.2p1_0931F.1_g238130' => 'hma', 'Hma1.2p1_1144F.1_g261230' => 'hma', 'Hma1.2p1_2082F.1_g313540' => 'hma', 'HPP92_000986' => 'vpl', 'HPP92_008170' => 'vpl', 'HPP92_013286' => 'vpl', 'HPP92_013298' => 'vpl', 'HPP92_018629' => 'vpl', 'HPP92_019543' => 'vpl', 'HPP92_023159' => 'vpl', 'HPP92_024113' => 'vpl', 'HPP92_024120' => 'vpl', 'HPP92_026327' => 'vpl', 'Hund06811' => 'sun', 'Hund09261' => 'sun', 'Lalb_Chr01g0012381' => 'lal', 'Lalb_Chr01g0017801' => 'lal', 'Lalb_Chr08g0234701' => 'lal', 'Lalb_Chr11g0063711' => 'lal', 'Lalb_Chr11g0063721' => 'lal', 'Lalb_Chr12g0198011' => 'lal', 'Lalb_Chr13g0301751' => 'lal', 'Lalb_Chr23g0268491' => 'lal', 'Lalb_Chr25g0287911' => 'lal', 'Lj1A1057T28' => 'lonja', 'Lj1A925T64' => 'lonja', 'Lj1g0008533' => 'lja', 'Lj1g0022227' => 'lja', 'Lj1g0027956' => 'lja', 'Lj2A950T27' => 'lonja', 'Lj2C36G17' => 'lonja', 'Lj3g0018638' => 'lja', 'Lj4g0000070' => 'lja', 'Lj5C71G8' => 'lonja', 'Lj5g0012380' => 'lja', 'Lj5g0022294' => 'lja', 'Lj8A706T36' => 'lonja', 'Lsat_1_v5_gn_0_21060' => 'lsa', 'Lsat_1_v5_gn_1_43420' => 'lsa', 'Lsat_1_v5_gn_1_58521' => 'lsa', 'Lsat_1_v5_gn_2_101721' => 'lsa', 'Lsat_1_v5_gn_2_106221' => 'lsa', 'Lsat_1_v5_gn_2_116261' => 'lsa', 'Lsat_1_v5_gn_4_128640' => 'lsa', 'Lsat_1_v5_gn_4_6481' => 'lsa', 'Lsat_1_v5_gn_5_95060' => 'lsa', 'Lsat_1_v5_gn_6_34800' => 'lsa', 'Lsat_1_v5_gn_7_43581' => 'lsa', 'Lsat_1_v5_gn_8_59200' => 'lsa', 'Manes.04G113200' => 'mes', 'Manes.06G057100' => 'mes', 'Manes.08G035600' => 'mes', 'Manes.09G043400' => 'mes', 'Manes.10G004550' => 'mes', 'Manes.10G051550' => 'mes', 'Manes.10G059300' => 'mes', 'Manes.11G056200' => 'mes', 'Manes.14G133700' => 'mes', 'Manes.15G159901' => 'mes', 'Manes.16G122200' => 'mes', 'Mapoly0067s0024' => 'mpo', 'MBI01_g29251_MAGBIO' => 'mbi', 'MBI04_g29343_MAGBIO' => 'mbi', 'MBI04_g29344_MAGBIO' => 'mbi', 'MBI05_g18603_MAGBIO' => 'mbi', 'MBI05_g24278_MAGBIO' => 'mbi', 'MBI05_g24491_MAGBIO' => 'mbi', 'MBI11_g41924_MAGBIO' => 'mbi', 'MBI14_g17610_MAGBIO' => 'mbi', 'MCO03G006' => 'mco', 'MD00G1123000' => 'mdo', 'MD00G1144300' => 'mdo', 'MD02G1029600' => 'mdo', 'MD02G1258100' => 'mdo', 'MD08G1150600' => 'mdo', 'MD12G1043000' => 'mdo', 'MD14G1041900' => 'mdo', 'MD15G1171000' => 'mdo', 'MD17G1210700' => 'mdo', 'Medtr0339s0010' => 'mtr', 'Medtr0339s0020' => 'mtr', 'Medtr1g056180' => 'mtr', 'Medtr3g107090' => 'mtr', 'Medtr4g010210' => 'mtr', 'Medtr4g114770' => 'mtr', 'Medtr4g114785' => 'mtr', 'Medtr6g052040' => 'mtr', 'Medtr6g052050' => 'mtr', 'Medtr6g060685' => 'mtr', 'Medtr6g060845' => 'mtr', 'Medtr6g060860' => 'mtr', 'Medtr6g465030' => 'mtr', 'Medtr6g465040' => 'mtr', 'Medtr6g466310' => 'mtr', 'Medtr7g106540' => 'mtr', 'MELO3C004492.2' => 'cme', 'MELO3C009557.2' => 'cme', 'MELO3C010329.2' => 'cme', 'MELO3C011263.2' => 'cme', 'MELO3C012329.2' => 'cme', 'MELO3C023419.2' => 'cme', 'Migut.A00042' => 'egut', 'Migut.D01073' => 'egut', 'Migut.D02387' => 'egut', 'Migut.F00831' => 'egut', 'Migut.L01854' => 'egut', 'MSTRG.10421' => 'ama', 'MSTRG.18789' => 'ama', 'MSTRG.19338' => 'ama', 'MSTRG.21012' => 'ama', 'MSTRG.4709' => 'ama', 'MSTRG.5918' => 'ama', 'MSTRG.9024' => 'ama', 'Nitab4.5_0000028g0210' => 'nta', 'Nitab4.5_0000209g0210' => 'nta', 'Nitab4.5_0000220g0030' => 'nta', 'Nitab4.5_0000373g0010' => 'nta', 'Nitab4.5_0000691g0010' => 'nta', 'Nitab4.5_0001349g0070' => 'nta', 'Nitab4.5_0001781g0090' => 'nta', 'Nitab4.5_0004647g0010' => 'nta', 'Nitab4.5_0004833g0010' => 'nta', 'Nitab4.5_0005205g0010' => 'nta', 'Nitab4.5_0006319g0010' => 'nta', 'Nitab4.5_0007034g0010' => 'nta', 'Nitab4.5_0007793g0050' => 'nta', 'Nitab4.5_0011210g0030' => 'nta', 'Nitab4.5_0011590g0010' => 'nta', 'Nitab4.5_0013105g0010' => 'nta', 'Nn1g00517' => 'nnu', 'Nn1g05440' => 'nnu', 'Nn1g05441' => 'nnu', 'Nn2g12066' => 'nnu', 'Nn2g12067' => 'nnu', 'Nn2g14369' => 'nnu', 'Nn2g15491' => 'nnu', 'Nn6g33466' => 'nnu', 'Nn6g34247' => 'nnu', 'Nn6g34620' => 'nnu', 'Nn6g34621' => 'nnu', 'Nn6g34678' => 'nnu', 'Nn8g39485' => 'nnu', 'Nn8g39487' => 'nnu', 'Nn8g39936' => 'nnu', 'Oeu000426.1' => 'oeu', 'Oeu003847.2' => 'oeu', 'Oeu009253.1' => 'oeu', 'Oeu020190.1' => 'oeu', 'Oeu021602.1' => 'oeu', 'Oeu033268.1' => 'oeu', 'Oeu039430.1' => 'oeu', 'Oeu042100.2' => 'oeu', 'Oeu045016.1' => 'oeu', 'Oeu045157.1' => 'oeu', 'Oeu051471.1' => 'oeu', 'Oeu051865.1' => 'oeu', 'Oeu063089.1' => 'oeu', 'Os01g0194000' => 'osa', 'Os03g0649000' => 'osa', 'Os12g0620400' => 'osa', 'Os12g0620600' => 'osa', 'Peaxi162Scf00083g02015' => 'pax', 'Peaxi162Scf00120g01314' => 'pax', 'Peaxi162Scf00135g00128' => 'pax', 'Peaxi162Scf00207g00645' => 'pax', 'Peaxi162Scf00313g00818' => 'pax', 'Peaxi162Scf00332g00710' => 'pax', 'Peaxi162Scf00870g00218' => 'pax', 'Peaxi162Scf03057g00005' => 'pax', 'PGR004G0178' => 'pgr', 'PGR102G1379' => 'pgr', 'PGR102G2200' => 'pgr', 'PGR142G3281' => 'pgr', 'PGSC0003DMG400000619' => 'stu', 'PGSC0003DMG400002001' => 'stu', 'PGSC0003DMG400002913' => 'stu', 'PGSC0003DMG400014109' => 'stu', 'PGSC0003DMG400019633' => 'stu', 'PGSC0003DMG400021369' => 'stu', 'PGSC0003DMG400025434' => 'stu', 'PGSC0003DMG400028533' => 'stu', 'PGSC0003DMG400032778' => 'stu', 'Phvul.001G051000' => 'pvu', 'Phvul.003G166200' => 'pvu', 'Phvul.007G136901' => 'pvu', 'Phvul.007G266600' => 'pvu', 'Phvul.009G092800' => 'pvu', 'Phvul.009G205300' => 'pvu', 'Phvul.010G155700' => 'pvu', 'Potri.001G192300' => 'ptr', 'Potri.006G067700' => 'ptr', 'Potri.006G201200' => 'ptr', 'Potri.008G015700' => 'ptr', 'Potri.010G244100' => 'ptr', 'Potri.016G067600' => 'ptr', 'Potri.018G027200' => 'ptr', 'Potri.018G129700' => 'ptr', 'Pp3c10_5530' => 'ppa', 'Pp3c10_6080' => 'ppa', 'Pp3c10_6090' => 'ppa', 'Pp3c10_6100' => 'ppa', 'Pp3c14_5190' => 'ppa', 'Pp3c14_5450' => 'ppa', 'Pp3c14_5460' => 'ppa', 'Pp3c14_5500' => 'ppa', 'Pp3c14_5502' => 'ppa', 'Pp3c17_8080' => 'ppa', 'Pp3c26_1270' => 'ppa', 'Prupe.1G481200' => 'ppe', 'Prupe.2G074400' => 'ppe', 'Prupe.3G086000' => 'ppe', 'Prupe.7G091900' => 'ppe', 'Prupe.7G245300' => 'ppe', 'Psat0s3297g0040' => 'psa', 'Psat4g037360' => 'psa', 'Psat5g028960' => 'psa', 'Psat6g126320' => 'psa', 'Psat7g256600' => 'psa', 'PSO017G4166' => 'pso', 'PSO170G3994' => 'pso', 'PSO339G0665' => 'pso', 'PSO339G1425' => 'pso', 'PSO339G4013' => 'pso', 'PSO384G2032' => 'pso', 'PSO384G5060' => 'pso', 'PSO384G5102' => 'pso', 'QL01p019266' => 'qlo', 'QL02p021647' => 'qlo', 'QL02p088992' => 'qlo', 'QL04p048757' => 'qlo', 'QL05p029652' => 'qlo', 'QL07p027259' => 'qlo', 'RcHm_v2.0_Chr2g0088151' => 'rch', 'RcHm_v2.0_Chr2g0135641' => 'rch', 'RcHm_v2.0_Chr3g0476551' => 'rch', 'RcHm_v2.0_Chr6g0297901' => 'rch', 'Rhsim01G0067800' => 'rsi', 'Rhsim02G0201200' => 'rsi', 'Rhsim03G0249400' => 'rsi', 'Rhsim09G0140300' => 'rsi', 'Rhsim12G0191400' => 'rsi', 'Sabra06G0050400' => 'sbr', 'Sabra06G0154900' => 'sbr', 'Sabra08G0009600' => 'sbr', 'Sabra10G0190800' => 'sbr', 'Sabra16G0068600' => 'sbr', 'Sabra18G0029600' => 'sbr', 'Sabra18G0110200' => 'sbr', 'SalBow3G1408' => 'sbo', 'SalBow4G0854' => 'sbo', 'SalBow5G0861' => 'sbo', 'SalBow6G3004' => 'sbo', 'SalBow6G6639' => 'sbo', 'Sc01g0005410' => 'sci', 'Sc09g0004770' => 'sci', 'Sc12g0000370' => 'sci', 'Sc12g0000380' => 'sci', 'Sc18g0000480' => 'sci', 'Sed0007251' => 'sed', 'Sed0010226' => 'sed', 'Sed0011508' => 'sed', 'Sed0012297' => 'sed', 'Sed0014687' => 'sed', 'Sed0016420' => 'sed', 'Sed0018562' => 'sed', 'Sed0023842' => 'sed', 'SEGI_10545' => 'sgi', 'SEGI_15658' => 'sgi', 'SEGI_20669' => 'sgi', 'SEGI_20838' => 'sgi', 'SEGI_22166' => 'sgi', 'SEGI_32414' => 'sgi', 'SEGI_34538' => 'sgi', 'SGA_v2.0_scaffold100G29612' => 'sas', 'SGA_v2.0_scaffold117G32356' => 'sas', 'SGA_v2.0_scaffold22G09811' => 'sas', 'SGA_v2.0_scaffold392G50673' => 'sas', 'SGA_v2.0_scaffold64G21932' => 'sas', 'SMO351G0179' => 'smo', 'SMO367G0999' => 'smo', 'Solyc01g006890.3' => 'sly', 'Solyc03g116680.3' => 'sly', 'Solyc04g009790.4' => 'sly', 'Solyc06g068140.3' => 'sly', 'Solyc07g008170.2' => 'sly', 'Solyc08g059710.4' => 'sly', 'Solyc11g006410.2' => 'sly', 'Solyc11g068910.3' => 'sly', 'Solyc12g009590.2' => 'sly', 'Sopen01g002880' => 'spe', 'Sopen03g035590' => 'spe', 'Sopen04g004910' => 'spe', 'Sopen06g025410' => 'spe', 'Sopen07g004040' => 'spe', 'Sopen08g009490' => 'spe', 'Sopen11g002310' => 'spe', 'Sopen11g027620' => 'spe', 'Sopen12g004580' => 'spe', 'Sp1g13660' => 'spa', 'Sp3g09990' => 'spa', 'Sp3g14110' => 'spa', 'Sp4g04680' => 'spa', 'Sp6g37970' => 'spa', 'TAR308G0001' => 'tar', 'TAR369G1125' => 'tar', 'TAR383G1099' => 'tar', 'TAR623G1408' => 'tar', 'TAR625G0253' => 'tar', 'TAR626G1272' => 'tar', 'TAR633G1780' => 'tar', 'TAR636G0018' => 'tar', 'TAR636G0275' => 'tar', 'TAR636G0793' => 'tar', 'TAR636G1710' => 'tar', 'TAR636G2171' => 'tar', 'TAR636G2493' => 'tar', 'TAR636G2647' => 'tar', 'TAR636G2877' => 'tar', 'TAR636G3305' => 'tar', 'THA.LOC104800408' => 'tha', 'THA.LOC104803656' => 'tha', 'THA.LOC104812505' => 'tha', 'THA.LOC104813565' => 'tha', 'THA.LOC104818025' => 'tha', 'THA.LOC104823154' => 'tha', 'THA.LOC104826797' => 'tha', 'THA.LOC104826960' => 'tha', 'Thecc.05G107900' => 'tca', 'Thecc.06G022500' => 'tca', 'Thecc.09G024700' => 'tca', 'Thecc.09G128800' => 'tca', 'Thhalv10000627m.g' => 'esa', 'Thhalv10007967m.g' => 'esa', 'Thhalv10012753m.g' => 'esa', 'Thhalv10020165m.g' => 'esa', 'TPR.G12195' => 'tpr', 'TPR.G17108' => 'tpr', 'TPR.G26494' => 'tpr', 'TPR.G3119' => 'tpr', 'TPR.G31295' => 'tpr', 'TPR.G31296' => 'tpr', 'TPR.G38670' => 'tpr', 'TPR.G9675' => 'tpr', 'TWI12G1245' => 'twi', 'TWI18G1397' => 'twi', 'TWI32G1344' => 'twi', 'TWI34G0240' => 'twi', 'TWI38G0494' => 'twi', 'TWI53G1316' => 'twi', 'TWI63G0183' => 'twi', 'TWI74G1462' => 'twi', 'TWI75G0465' => 'twi', 'TWI79G0620' => 'twi', 'unitig_52.g17079' => 'ugi', 'unitig_746.g26784' => 'ugi', 'unitig_899.g14458' => 'ugi', 'vmacro06139' => 'vma', 'vmacro10332' => 'vma', 'vmacro11175' => 'vma', 'vmacro16899' => 'vma', 'vmacro20573' => 'vma', 'vmacro22390' => 'vma', 'VMungo0331G0470' => 'vmu', 'VMungo0647G0733' => 'vmu', 'VMungo0720G1766' => 'vmu', 'VMungo1215G1714' => 'vmu', 'VMungo1309G1072' => 'vmu', 'VMungo1309G2371' => 'vmu', 'VMungo1383G3102' => 'vmu', 'Zm00001eb032060' => 'zma', 'Zm00001eb044160' => 'zma', 'Zm00001eb050220' => 'zma', 'Zm00001eb053010' => 'zma', 'Zm00001eb121070' => 'zma', 'Zm00001eb134560' => 'zma', 'Zm00001eb134600' => 'zma', 'Zm00001eb218530' => 'zma', 'Zm00001eb325610' => 'zma', 'Zm00001eb337340' => 'zma' ) $gf_id = 'HOM05D000771' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000771' ) $data_identifier = 'HOM05D000771' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 7, 'can' => (int) 24, 'cansat' => (int) 11, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 9, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 4, 'gma' => (int) 19, 'ghi' => (int) 17, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 12, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 15, 'oeu' => (int) 13, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 16, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb337340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1